NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,741.4 |
| Mean read quality |
9.9 |
| Median read length |
600.0 |
| Median read quality |
10.7 |
| Number of reads |
5,736,175.0 |
| Read length N50 |
5,316.0 |
| STDEV read length |
3,165.0 |
| Total bases |
9,989,058,683.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
5710627 (99.6%) 9982.0Mb |
| >Q7 |
5694369 (99.3%) 9975.8Mb |
| >Q10 |
3830142 (66.8%) 7211.0Mb |
| >Q12 |
1103073 (19.2%) 2025.9Mb |
| >Q15 |
10085 (0.2%) 5.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.9 (273) |
| 2 |
18.8 (486) |
| 3 |
18.7 (603) |
| 4 |
18.7 (258) |
| 5 |
18.5 (255) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
63486 (11.4) |
| 2 |
58261 (11.7) |
| 3 |
58182 (8.4) |
| 4 |
58144 (8.3) |
| 5 |
53667 (11.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot