NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,709.1 |
| Mean read quality |
10.4 |
| Median read length |
964.0 |
| Median read quality |
11.5 |
| Number of reads |
1,361,290.0 |
| Read length N50 |
7,264.0 |
| STDEV read length |
3,921.3 |
| Total bases |
3,687,818,011.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1353729 (99.4%) 3685.8Mb |
| >Q7 |
1347678 (99.0%) 3683.6Mb |
| >Q10 |
1014160 (74.5%) 2852.5Mb |
| >Q12 |
549194 (40.3%) 1604.5Mb |
| >Q15 |
28186 (2.1%) 46.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.5 (211) |
| 2 |
20.3 (223) |
| 3 |
20.0 (196) |
| 4 |
19.9 (278) |
| 5 |
19.8 (243) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
73364 (8.8) |
| 2 |
69118 (8.5) |
| 3 |
63222 (8.8) |
| 4 |
58021 (9.5) |
| 5 |
57089 (8.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot