NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,188.4 |
| Mean read quality |
11.2 |
| Median read length |
2,594.0 |
| Median read quality |
12.5 |
| Number of reads |
913,549.0 |
| Read length N50 |
8,021.0 |
| STDEV read length |
4,900.1 |
| Total bases |
3,826,344,823.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
910070 (99.6%) 3825.4Mb |
| >Q7 |
907450 (99.3%) 3824.0Mb |
| >Q10 |
764457 (83.7%) 3232.1Mb |
| >Q12 |
544659 (59.6%) 2431.4Mb |
| >Q15 |
37910 (4.1%) 146.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.4 (254) |
| 2 |
20.8 (374) |
| 3 |
20.4 (270) |
| 4 |
20.3 (264) |
| 5 |
20.1 (241) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
106341 (9.3) |
| 2 |
100989 (14.2) |
| 3 |
94624 (9.9) |
| 4 |
87554 (9.8) |
| 5 |
82328 (9.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot