NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,925.8 |
| Mean read quality |
11.0 |
| Median read length |
1,043.0 |
| Median read quality |
12.2 |
| Number of reads |
1,439,179.0 |
| Read length N50 |
8,170.0 |
| STDEV read length |
4,932.4 |
| Total bases |
4,210,767,139.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1433331 (99.6%) 4209.1Mb |
| >Q7 |
1428408 (99.3%) 4206.8Mb |
| >Q10 |
1214283 (84.4%) 3687.1Mb |
| >Q12 |
774968 (53.8%) 2567.0Mb |
| >Q15 |
27587 (1.9%) 44.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.9 (248) |
| 2 |
19.7 (224) |
| 3 |
19.6 (393) |
| 4 |
19.6 (303) |
| 5 |
19.2 (375) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
102599 (9.2) |
| 2 |
92976 (13.7) |
| 3 |
91901 (11.5) |
| 4 |
91515 (9.7) |
| 5 |
88980 (13.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot