NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,306.6 |
| Mean read quality |
8.3 |
| Median read length |
526.0 |
| Median read quality |
9.3 |
| Number of reads |
82,008.0 |
| Read length N50 |
8,229.0 |
| STDEV read length |
3,827.6 |
| Total bases |
189,161,393.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
80889 (98.6%) 187.2Mb |
| >Q7 |
69733 (85.0%) 166.3Mb |
| >Q10 |
30621 (37.3%) 78.5Mb |
| >Q12 |
8173 (10.0%) 17.0Mb |
| >Q15 |
386 (0.5%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
22.8 (202) |
| 2 |
21.7 (222) |
| 3 |
20.8 (147) |
| 4 |
19.7 (211) |
| 5 |
19.5 (256) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
55314 (11.4) |
| 2 |
46990 (7.1) |
| 3 |
38855 (7.9) |
| 4 |
38656 (11.4) |
| 5 |
34470 (12.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot