NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,301.4 |
| Mean read quality |
8.3 |
| Median read length |
588.0 |
| Median read quality |
9.3 |
| Number of reads |
79,877.0 |
| Read length N50 |
8,296.0 |
| STDEV read length |
3,866.2 |
| Total bases |
183,832,454.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
78655 (98.5%) 181.5Mb |
| >Q7 |
67536 (84.5%) 159.9Mb |
| >Q10 |
29939 (37.5%) 74.9Mb |
| >Q12 |
8333 (10.4%) 16.3Mb |
| >Q15 |
407 (0.5%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.9 (161) |
| 2 |
20.5 (186) |
| 3 |
20.1 (263) |
| 4 |
19.9 (260) |
| 5 |
19.9 (400) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
40479 (13.1) |
| 2 |
33885 (7.0) |
| 3 |
33480 (11.6) |
| 4 |
32381 (8.1) |
| 5 |
31554 (7.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot