NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,238.5 |
| Mean read quality |
10.4 |
| Median read length |
447.0 |
| Median read quality |
11.6 |
| Number of reads |
504,101.0 |
| Read length N50 |
4,238.0 |
| STDEV read length |
2,842.6 |
| Total bases |
624,336,498.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
504098 (100.0%) 624.3Mb |
| >Q7 |
502268 (99.6%) 623.7Mb |
| >Q10 |
354870 (70.4%) 450.1Mb |
| >Q12 |
226506 (44.9%) 282.9Mb |
| >Q15 |
43405 (8.6%) 23.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
27.8 (136) |
| 2 |
27.8 (126) |
| 3 |
27.7 (121) |
| 4 |
27.4 (111) |
| 5 |
27.3 (122) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
58117 (8.2) |
| 2 |
55625 (7.6) |
| 3 |
55046 (7.6) |
| 4 |
52742 (12.4) |
| 5 |
52639 (8.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot