NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
668.6 |
| Mean read quality |
9.8 |
| Median read length |
343.0 |
| Median read quality |
10.8 |
| Number of reads |
89,035.0 |
| Read length N50 |
1,129.0 |
| STDEV read length |
1,135.0 |
| Total bases |
59,525,740.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
89023 (100.0%) 59.5Mb |
| >Q7 |
88405 (99.3%) 59.4Mb |
| >Q10 |
55019 (61.8%) 37.2Mb |
| >Q12 |
28456 (32.0%) 18.5Mb |
| >Q15 |
4158 (4.7%) 1.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
28.4 (203) |
| 2 |
27.4 (114) |
| 3 |
24.5 (206) |
| 4 |
24.4 (298) |
| 5 |
24.4 (270) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
29180 (11.9) |
| 2 |
23624 (7.4) |
| 3 |
23170 (8.1) |
| 4 |
23119 (10.5) |
| 5 |
22754 (11.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot