NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,237.2 |
| Mean read quality |
10.3 |
| Median read length |
626.0 |
| Median read quality |
12.2 |
| Number of reads |
4,595,344.0 |
| Read length N50 |
2,344.0 |
| STDEV read length |
1,866.1 |
| Total bases |
5,685,420,712.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
4567670 (99.4%) 5653.8Mb |
| >Q7 |
4293801 (93.4%) 5305.4Mb |
| >Q10 |
3271398 (71.2%) 4013.1Mb |
| >Q12 |
2382605 (51.8%) 2956.9Mb |
| >Q15 |
677934 (14.8%) 712.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
31.8 (167) |
| 2 |
29.2 (143) |
| 3 |
28.9 (100) |
| 4 |
28.1 (193) |
| 5 |
27.8 (207) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
570652 (3.9) |
| 2 |
534322 (3.8) |
| 3 |
208365 (3.7) |
| 4 |
116548 (3.5) |
| 5 |
73198 (5.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot