NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,414.8 |
| Mean read quality |
10.2 |
| Median read length |
622.0 |
| Median read quality |
11.2 |
| Number of reads |
39,214.0 |
| Read length N50 |
7,806.0 |
| STDEV read length |
4,135.8 |
| Total bases |
94,695,534.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
39213 (100.0%) 94.7Mb |
| >Q7 |
39088 (99.7%) 94.7Mb |
| >Q10 |
27637 (70.5%) 71.0Mb |
| >Q12 |
13705 (34.9%) 36.1Mb |
| >Q15 |
1060 (2.7%) 0.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
22.7 (236) |
| 2 |
21.3 (175) |
| 3 |
21.2 (115) |
| 4 |
21.0 (169) |
| 5 |
20.9 (133) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
52676 (8.2) |
| 2 |
40338 (9.6) |
| 3 |
39941 (7.5) |
| 4 |
39505 (7.5) |
| 5 |
39321 (12.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot