NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
375.3 |
| Mean read quality |
8.8 |
| Median read length |
207.0 |
| Median read quality |
9.4 |
| Number of reads |
4,370.0 |
| Read length N50 |
479.0 |
| STDEV read length |
947.0 |
| Total bases |
1,640,263.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
4370 (100.0%) 1.6Mb |
| >Q7 |
4268 (97.7%) 1.6Mb |
| >Q10 |
1722 (39.4%) 0.8Mb |
| >Q12 |
632 (14.5%) 0.3Mb |
| >Q15 |
79 (1.8%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.6 (185) |
| 2 |
18.6 (284) |
| 3 |
18.4 (134) |
| 4 |
18.2 (100) |
| 5 |
17.8 (305) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
27764 (10.0) |
| 2 |
22152 (10.1) |
| 3 |
20416 (9.5) |
| 4 |
17768 (12.5) |
| 5 |
15611 (13.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot