NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,998.3 |
| Mean read quality |
9.3 |
| Median read length |
2,584.0 |
| Median read quality |
10.0 |
| Number of reads |
432,415.0 |
| Read length N50 |
10,627.0 |
| STDEV read length |
5,724.8 |
| Total bases |
2,161,346,768.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
432415 (100.0%) 2161.3Mb |
| >Q7 |
432047 (99.9%) 2161.2Mb |
| >Q10 |
215152 (49.8%) 1098.8Mb |
| >Q12 |
68593 (15.9%) 310.4Mb |
| >Q15 |
3055 (0.7%) 5.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.1 (114) |
| 2 |
20.9 (285) |
| 3 |
20.9 (297) |
| 4 |
20.6 (214) |
| 5 |
20.4 (335) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
67043 (8.4) |
| 2 |
60982 (7.3) |
| 3 |
59517 (9.4) |
| 4 |
58821 (7.7) |
| 5 |
56756 (8.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot