NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
962.7 |
| Mean read quality |
9.5 |
| Median read length |
499.0 |
| Median read quality |
10.3 |
| Number of reads |
4,289.0 |
| Read length N50 |
1,604.0 |
| STDEV read length |
1,957.0 |
| Total bases |
4,128,834.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
4289 (100.0%) 4.1Mb |
| >Q7 |
4265 (99.4%) 4.1Mb |
| >Q10 |
2315 (54.0%) 2.3Mb |
| >Q12 |
1313 (30.6%) 1.2Mb |
| >Q15 |
225 (5.2%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.1 (158) |
| 2 |
20.7 (240) |
| 3 |
19.1 (197) |
| 4 |
19.0 (135) |
| 5 |
19.0 (172) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
36089 (7.7) |
| 2 |
33748 (9.3) |
| 3 |
31596 (8.0) |
| 4 |
29120 (11.0) |
| 5 |
28171 (12.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot