NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
803.8 |
| Mean read quality |
9.9 |
| Median read length |
241.0 |
| Median read quality |
10.8 |
| Number of reads |
38,076.0 |
| Read length N50 |
3,550.0 |
| STDEV read length |
2,160.5 |
| Total bases |
30,607,249.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
38074 (100.0%) 30.6Mb |
| >Q7 |
37924 (99.6%) 30.6Mb |
| >Q10 |
24458 (64.2%) 20.5Mb |
| >Q12 |
10844 (28.5%) 8.6Mb |
| >Q15 |
1200 (3.2%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.9 (149) |
| 2 |
21.9 (96) |
| 3 |
21.8 (94) |
| 4 |
21.6 (106) |
| 5 |
21.6 (148) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
54277 (7.6) |
| 2 |
47571 (8.6) |
| 3 |
43043 (8.2) |
| 4 |
39439 (9.0) |
| 5 |
37159 (7.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot