NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,645.8 |
| Mean read quality |
10.2 |
| Median read length |
1,168.5 |
| Median read quality |
11.2 |
| Number of reads |
23,426.0 |
| Read length N50 |
9,901.0 |
| STDEV read length |
5,486.8 |
| Total bases |
85,406,155.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
23426 (100.0%) 85.4Mb |
| >Q7 |
23389 (99.8%) 85.4Mb |
| >Q10 |
16589 (70.8%) 63.7Mb |
| >Q12 |
7882 (33.6%) 29.8Mb |
| >Q15 |
502 (2.1%) 0.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
22.4 (168) |
| 2 |
21.2 (242) |
| 3 |
21.1 (228) |
| 4 |
20.7 (216) |
| 5 |
19.6 (301) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
61312 (7.6) |
| 2 |
54681 (11.0) |
| 3 |
52074 (7.6) |
| 4 |
51425 (10.0) |
| 5 |
49980 (7.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot