NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
6,483.0 |
| Mean read quality |
11.3 |
| Median read length |
4,740.0 |
| Median read quality |
12.6 |
| Number of reads |
189,735.0 |
| Read length N50 |
11,632.0 |
| STDEV read length |
6,517.8 |
| Total bases |
1,230,047,024.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
189269 (99.8%) 1229.9Mb |
| >Q7 |
188886 (99.6%) 1229.7Mb |
| >Q10 |
162694 (85.7%) 1080.5Mb |
| >Q12 |
117961 (62.2%) 831.8Mb |
| >Q15 |
5920 (3.1%) 30.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.1 (278) |
| 2 |
18.9 (659) |
| 3 |
18.5 (481) |
| 4 |
18.3 (256) |
| 5 |
18.3 (326) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
87092 (9.6) |
| 2 |
82158 (13.4) |
| 3 |
78679 (9.3) |
| 4 |
76409 (9.2) |
| 5 |
70893 (9.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot