NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,555.0 |
| Mean read quality |
9.2 |
| Median read length |
647.0 |
| Median read quality |
9.9 |
| Number of reads |
250,271.0 |
| Read length N50 |
3,901.0 |
| STDEV read length |
2,855.0 |
| Total bases |
389,172,161.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
250271 (100.0%) 389.2Mb |
| >Q7 |
249836 (99.8%) 389.0Mb |
| >Q10 |
120894 (48.3%) 191.4Mb |
| >Q12 |
33125 (13.2%) 40.7Mb |
| >Q15 |
1141 (0.5%) 0.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.7 (330) |
| 2 |
19.5 (305) |
| 3 |
19.3 (274) |
| 4 |
19.1 (376) |
| 5 |
19.1 (305) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
71944 (10.0) |
| 2 |
68831 (7.5) |
| 3 |
61283 (8.0) |
| 4 |
56737 (8.0) |
| 5 |
56383 (8.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot