NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,404.1 |
| Mean read quality |
10.1 |
| Median read length |
445.0 |
| Median read quality |
11.0 |
| Number of reads |
26,121.0 |
| Read length N50 |
4,733.0 |
| STDEV read length |
2,699.7 |
| Total bases |
36,675,750.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
26121 (100.0%) 36.7Mb |
| >Q7 |
26037 (99.7%) 36.7Mb |
| >Q10 |
17548 (67.2%) 24.9Mb |
| >Q12 |
8429 (32.3%) 10.4Mb |
| >Q15 |
1057 (4.0%) 0.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
22.0 (181) |
| 2 |
21.7 (182) |
| 3 |
21.6 (183) |
| 4 |
21.4 (291) |
| 5 |
20.9 (206) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
42388 (7.8) |
| 2 |
40445 (7.4) |
| 3 |
30792 (10.5) |
| 4 |
28232 (12.5) |
| 5 |
27874 (11.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot