NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
729.3 |
| Mean read quality |
10.1 |
| Median read length |
393.0 |
| Median read quality |
11.1 |
| Number of reads |
257,439.0 |
| Read length N50 |
1,112.0 |
| STDEV read length |
1,372.8 |
| Total bases |
187,749,959.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
257410 (100.0%) 187.7Mb |
| >Q7 |
256586 (99.7%) 187.6Mb |
| >Q10 |
171898 (66.8%) 125.9Mb |
| >Q12 |
90612 (35.2%) 64.0Mb |
| >Q15 |
12701 (4.9%) 5.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
24.3 (94) |
| 2 |
24.3 (146) |
| 3 |
24.1 (172) |
| 4 |
23.2 (223) |
| 5 |
23.1 (102) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
57123 (8.5) |
| 2 |
52795 (8.4) |
| 3 |
42179 (10.0) |
| 4 |
38674 (9.2) |
| 5 |
38648 (8.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot