NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,255.8 |
| Mean read quality |
9.2 |
| Median read length |
975.0 |
| Median read quality |
9.9 |
| Number of reads |
324,483.0 |
| Read length N50 |
5,250.0 |
| STDEV read length |
3,577.8 |
| Total bases |
731,979,016.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
324482 (100.0%) 732.0Mb |
| >Q7 |
324250 (99.9%) 731.9Mb |
| >Q10 |
155988 (48.1%) 363.8Mb |
| >Q12 |
48458 (14.9%) 99.2Mb |
| >Q15 |
1720 (0.5%) 1.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.4 (312) |
| 2 |
21.0 (203) |
| 3 |
20.4 (148) |
| 4 |
20.1 (656) |
| 5 |
19.7 (329) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
67835 (8.2) |
| 2 |
61421 (8.0) |
| 3 |
59330 (8.4) |
| 4 |
56975 (7.4) |
| 5 |
56885 (7.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot