NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,033.9 |
| Mean read quality |
10.1 |
| Median read length |
1,671.0 |
| Median read quality |
11.1 |
| Number of reads |
24,385.0 |
| Read length N50 |
9,547.0 |
| STDEV read length |
5,281.1 |
| Total bases |
98,367,246.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
24381 (100.0%) 98.4Mb |
| >Q7 |
24325 (99.8%) 98.4Mb |
| >Q10 |
17048 (69.9%) 71.4Mb |
| >Q12 |
7979 (32.7%) 31.9Mb |
| >Q15 |
473 (1.9%) 0.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
23.8 (160) |
| 2 |
23.5 (144) |
| 3 |
23.0 (124) |
| 4 |
21.0 (260) |
| 5 |
20.8 (230) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
50610 (8.1) |
| 2 |
50347 (10.7) |
| 3 |
48882 (7.3) |
| 4 |
42212 (10.1) |
| 5 |
42201 (8.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot