NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,173.6 |
| Mean read quality |
9.5 |
| Median read length |
773.0 |
| Median read quality |
10.2 |
| Number of reads |
11,061.0 |
| Read length N50 |
5,977.0 |
| STDEV read length |
3,455.9 |
| Total bases |
24,041,862.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
11061 (100.0%) 24.0Mb |
| >Q7 |
11047 (99.9%) 24.0Mb |
| >Q10 |
6097 (55.1%) 13.3Mb |
| >Q12 |
1975 (17.9%) 3.8Mb |
| >Q15 |
75 (0.7%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.8 (31) |
| 2 |
19.5 (1174) |
| 3 |
19.2 (206) |
| 4 |
18.2 (194) |
| 5 |
18.0 (154) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
39034 (10.2) |
| 2 |
37706 (7.3) |
| 3 |
35934 (8.0) |
| 4 |
32871 (10.7) |
| 5 |
32643 (8.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot