NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,400.9 |
| Mean read quality |
9.8 |
| Median read length |
480.0 |
| Median read quality |
10.7 |
| Number of reads |
5,963.0 |
| Read length N50 |
4,638.0 |
| STDEV read length |
2,854.6 |
| Total bases |
8,353,425.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
5958 (99.9%) 8.4Mb |
| >Q7 |
5932 (99.5%) 8.3Mb |
| >Q10 |
3694 (61.9%) 5.5Mb |
| >Q12 |
1568 (26.3%) 2.4Mb |
| >Q15 |
102 (1.7%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.5 (269) |
| 2 |
18.3 (139) |
| 3 |
18.2 (134) |
| 4 |
18.0 (155) |
| 5 |
17.9 (939) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
40594 (8.1) |
| 2 |
32589 (13.3) |
| 3 |
30676 (9.4) |
| 4 |
29416 (11.0) |
| 5 |
28764 (10.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot