NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
799.9 |
| Mean read quality |
9.9 |
| Median read length |
363.0 |
| Median read quality |
10.8 |
| Number of reads |
19,573.0 |
| Read length N50 |
1,551.0 |
| STDEV read length |
1,680.7 |
| Total bases |
15,655,508.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
19572 (100.0%) 15.7Mb |
| >Q7 |
19435 (99.3%) 15.6Mb |
| >Q10 |
12544 (64.1%) 10.3Mb |
| >Q12 |
5661 (28.9%) 4.3Mb |
| >Q15 |
492 (2.5%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
24.6 (105) |
| 2 |
21.2 (241) |
| 3 |
20.4 (150) |
| 4 |
20.0 (244) |
| 5 |
19.7 (181) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
42532 (8.8) |
| 2 |
29480 (13.0) |
| 3 |
28564 (10.9) |
| 4 |
26866 (11.4) |
| 5 |
25803 (8.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot