NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,825.5 |
| Mean read quality |
10.1 |
| Median read length |
884.0 |
| Median read quality |
11.0 |
| Number of reads |
1,094.0 |
| Read length N50 |
7,773.0 |
| STDEV read length |
4,256.2 |
| Total bases |
3,091,061.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1094 (100.0%) 3.1Mb |
| >Q7 |
1091 (99.7%) 3.1Mb |
| >Q10 |
747 (68.3%) 2.4Mb |
| >Q12 |
371 (33.9%) 1.2Mb |
| >Q15 |
27 (2.5%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.5 (224) |
| 2 |
17.4 (108) |
| 3 |
17.0 (445) |
| 4 |
16.8 (464) |
| 5 |
16.7 (570) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
27146 (10.1) |
| 2 |
27080 (13.0) |
| 3 |
26380 (12.4) |
| 4 |
24849 (9.7) |
| 5 |
24148 (12.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot