NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,494.5 |
| Mean read quality |
8.9 |
| Median read length |
1,056.5 |
| Median read quality |
9.6 |
| Number of reads |
1,806.0 |
| Read length N50 |
9,262.0 |
| STDEV read length |
5,075.4 |
| Total bases |
6,311,046.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1804 (99.9%) 6.3Mb |
| >Q7 |
1799 (99.6%) 6.3Mb |
| >Q10 |
740 (41.0%) 2.7Mb |
| >Q12 |
218 (12.1%) 0.8Mb |
| >Q15 |
11 (0.6%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.5 (266) |
| 2 |
16.4 (743) |
| 3 |
16.2 (784) |
| 4 |
15.9 (558) |
| 5 |
15.4 (2609) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
40955 (7.9) |
| 2 |
38788 (8.9) |
| 3 |
30864 (9.6) |
| 4 |
29567 (12.4) |
| 5 |
27365 (10.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot