NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
960.5 |
| Mean read quality |
9.9 |
| Median read length |
526.0 |
| Median read quality |
11.0 |
| Number of reads |
853,517.0 |
| Read length N50 |
1,468.0 |
| STDEV read length |
1,794.1 |
| Total bases |
819,791,215.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
853517 (100.0%) 819.8Mb |
| >Q7 |
850520 (99.6%) 818.7Mb |
| >Q10 |
530696 (62.2%) 510.9Mb |
| >Q12 |
322476 (37.8%) 311.9Mb |
| >Q15 |
52887 (6.2%) 30.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
26.7 (54) |
| 2 |
25.3 (130) |
| 3 |
25.0 (96) |
| 4 |
24.9 (217) |
| 5 |
24.6 (123) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
55638 (8.4) |
| 2 |
55487 (10.2) |
| 3 |
55417 (7.3) |
| 4 |
55165 (8.0) |
| 5 |
54251 (8.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot