NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,281.5 |
| Mean read quality |
11.1 |
| Median read length |
1,058.0 |
| Median read quality |
12.2 |
| Number of reads |
204,697.0 |
| Read length N50 |
10,341.0 |
| STDEV read length |
5,229.5 |
| Total bases |
671,718,392.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
204419 (99.9%) 671.6Mb |
| >Q7 |
204218 (99.8%) 671.5Mb |
| >Q10 |
173460 (84.7%) 589.2Mb |
| >Q12 |
112542 (55.0%) 431.5Mb |
| >Q15 |
3397 (1.7%) 6.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.6 (261) |
| 2 |
18.6 (494) |
| 3 |
18.5 (366) |
| 4 |
18.4 (177) |
| 5 |
18.4 (290) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
70716 (9.1) |
| 2 |
61324 (8.7) |
| 3 |
60130 (13.6) |
| 4 |
59274 (8.9) |
| 5 |
55626 (9.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot