NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,223.2 |
| Mean read quality |
10.6 |
| Median read length |
1,782.0 |
| Median read quality |
11.7 |
| Number of reads |
561,931.0 |
| Read length N50 |
6,090.0 |
| STDEV read length |
3,770.3 |
| Total bases |
1,811,210,786.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
560728 (99.8%) 1810.8Mb |
| >Q7 |
559365 (99.5%) 1810.1Mb |
| >Q10 |
443788 (79.0%) 1345.3Mb |
| >Q12 |
246239 (43.8%) 802.5Mb |
| >Q15 |
1812 (0.3%) 2.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.3 (217) |
| 2 |
18.0 (588) |
| 3 |
18.0 (460) |
| 4 |
17.7 (333) |
| 5 |
17.3 (269) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
77681 (9.2) |
| 2 |
62031 (12.6) |
| 3 |
59793 (8.5) |
| 4 |
58142 (7.4) |
| 5 |
57275 (7.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot