NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,161.4 |
| Mean read quality |
9.7 |
| Median read length |
1,191.0 |
| Median read quality |
10.8 |
| Number of reads |
127,334.0 |
| Read length N50 |
7,999.0 |
| STDEV read length |
4,383.1 |
| Total bases |
402,556,319.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
127334 (100.0%) 402.6Mb |
| >Q7 |
126660 (99.5%) 402.4Mb |
| >Q10 |
79862 (62.7%) 292.6Mb |
| >Q12 |
32825 (25.8%) 118.3Mb |
| >Q15 |
527 (0.4%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.4 (86) |
| 2 |
19.4 (210) |
| 3 |
18.8 (212) |
| 4 |
18.8 (138) |
| 5 |
18.4 (248) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
55121 (10.9) |
| 2 |
48850 (8.8) |
| 3 |
46178 (12.9) |
| 4 |
45703 (12.2) |
| 5 |
44413 (9.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot