NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,184.5 |
| Mean read quality |
8.0 |
| Median read length |
635.0 |
| Median read quality |
8.9 |
| Number of reads |
82,541.0 |
| Read length N50 |
7,269.0 |
| STDEV read length |
3,626.2 |
| Total bases |
180,309,993.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
81153 (98.3%) 178.0Mb |
| >Q7 |
66932 (81.1%) 154.2Mb |
| >Q10 |
27023 (32.7%) 68.3Mb |
| >Q12 |
7045 (8.5%) 13.9Mb |
| >Q15 |
302 (0.4%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
22.1 (128) |
| 2 |
19.8 (140) |
| 3 |
19.5 (102) |
| 4 |
19.3 (130) |
| 5 |
19.2 (170) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
46887 (6.5) |
| 2 |
38269 (8.8) |
| 3 |
35696 (10.6) |
| 4 |
34246 (10.7) |
| 5 |
33964 (10.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot