NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,790.5 |
| Mean read quality |
10.1 |
| Median read length |
872.0 |
| Median read quality |
11.1 |
| Number of reads |
58,020.0 |
| Read length N50 |
8,111.0 |
| STDEV read length |
4,380.8 |
| Total bases |
161,905,813.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
58016 (100.0%) 161.9Mb |
| >Q7 |
57933 (99.9%) 161.9Mb |
| >Q10 |
40624 (70.0%) 117.6Mb |
| >Q12 |
18554 (32.0%) 51.3Mb |
| >Q15 |
1099 (1.9%) 0.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.7 (108) |
| 2 |
20.5 (216) |
| 3 |
20.5 (136) |
| 4 |
20.4 (142) |
| 5 |
20.2 (159) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
58135 (7.5) |
| 2 |
48629 (7.5) |
| 3 |
47707 (7.8) |
| 4 |
45099 (11.0) |
| 5 |
42550 (11.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot