NanoPlot statistics report

NanoPlot reports

Summary statistics

General summary
Mean read length 1,348.4
Mean read quality 10.4
Median read length 412.0
Median read quality 11.5
Number of reads 11,257,796.0
Read length N50 5,643.0
STDEV read length 3,167.1
Total bases 15,180,186,437.0
Number, percentage and megabases of reads above quality cutoffs
>Q5 11257772 (100.0%) 15180.2Mb
>Q7 11241078 (99.9%) 15175.6Mb
>Q10 8036190 (71.4%) 11034.5Mb
>Q12 4746169 (42.2%) 6319.1Mb
>Q15 799087 (7.1%) 537.3Mb
Top 5 highest mean basecall quality scores and their read lengths
1 31.0 (138)
2 29.4 (200)
3 29.0 (165)
4 28.8 (96)
5 28.6 (134)
Top 5 longest reads and their mean basecall quality score
1 96121 (8.2)
2 90677 (8.1)
3 84952 (7.9)
4 84760 (9.0)
5 80179 (8.5)

Plots

Weighted histogram of read lengths

Weighted histogram of read lengths after log transformation

Non weighted histogram of read lengths

Non weighted histogram of read lengths after log transformation

Yield by length

Read lengths vs Average read quality plot using dots

Read lengths vs Average read quality kde plot