NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,684.5 |
| Mean read quality |
10.0 |
| Median read length |
465.0 |
| Median read quality |
10.9 |
| Number of reads |
184,719.0 |
| Read length N50 |
12,604.0 |
| STDEV read length |
5,316.4 |
| Total bases |
495,883,691.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
184719 (100.0%) 495.9Mb |
| >Q7 |
184366 (99.8%) 495.8Mb |
| >Q10 |
123520 (66.9%) 329.3Mb |
| >Q12 |
52469 (28.4%) 93.2Mb |
| >Q15 |
4706 (2.5%) 1.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
27.1 (122) |
| 2 |
23.7 (99) |
| 3 |
23.0 (144) |
| 4 |
22.9 (231) |
| 5 |
22.8 (210) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
74243 (7.5) |
| 2 |
65260 (7.3) |
| 3 |
63865 (7.3) |
| 4 |
61794 (8.5) |
| 5 |
57705 (7.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot