NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,820.9 |
| Mean read quality |
10.4 |
| Median read length |
2,799.0 |
| Median read quality |
12.7 |
| Number of reads |
3,174.0 |
| Read length N50 |
9,872.0 |
| STDEV read length |
5,540.4 |
| Total bases |
15,301,551.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3110 (98.0%) 15.3Mb |
| >Q7 |
3106 (97.9%) 15.3Mb |
| >Q10 |
2399 (75.6%) 12.2Mb |
| >Q12 |
1882 (59.3%) 10.2Mb |
| >Q15 |
223 (7.0%) 1.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.1 (286) |
| 2 |
18.4 (218) |
| 3 |
17.6 (193) |
| 4 |
17.6 (243) |
| 5 |
17.1 (625) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
34204 (14.3) |
| 2 |
33429 (15.2) |
| 3 |
33219 (13.1) |
| 4 |
32110 (9.3) |
| 5 |
32094 (11.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot