NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,361.5 |
| Mean read quality |
9.2 |
| Median read length |
436.0 |
| Median read quality |
10.0 |
| Number of reads |
700,482.0 |
| Read length N50 |
5,921.0 |
| STDEV read length |
3,392.4 |
| Total bases |
953,691,120.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
700478 (100.0%) 953.7Mb |
| >Q7 |
698346 (99.7%) 953.1Mb |
| >Q10 |
343112 (49.0%) 478.2Mb |
| >Q12 |
102646 (14.7%) 101.4Mb |
| >Q15 |
5299 (0.8%) 1.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
23.6 (161) |
| 2 |
22.6 (249) |
| 3 |
21.6 (172) |
| 4 |
21.2 (269) |
| 5 |
21.1 (198) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
84898 (9.8) |
| 2 |
76395 (7.7) |
| 3 |
69436 (8.2) |
| 4 |
68754 (7.8) |
| 5 |
68262 (7.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot