NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,173.9 |
| Mean read quality |
10.0 |
| Median read length |
358.0 |
| Median read quality |
11.0 |
| Number of reads |
138,188.0 |
| Read length N50 |
5,102.0 |
| STDEV read length |
2,855.8 |
| Total bases |
162,216,522.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
138188 (100.0%) 162.2Mb |
| >Q7 |
137544 (99.5%) 162.1Mb |
| >Q10 |
93039 (67.3%) 116.0Mb |
| >Q12 |
40695 (29.4%) 43.0Mb |
| >Q15 |
2392 (1.7%) 0.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
24.2 (102) |
| 2 |
20.9 (166) |
| 3 |
20.6 (93) |
| 4 |
20.3 (164) |
| 5 |
20.2 (174) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
55984 (9.6) |
| 2 |
54732 (9.3) |
| 3 |
51154 (7.7) |
| 4 |
50277 (8.6) |
| 5 |
48205 (12.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot