NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,566.1 |
| Mean read quality |
8.3 |
| Median read length |
1,984.0 |
| Median read quality |
9.3 |
| Number of reads |
40,019.0 |
| Read length N50 |
13,625.0 |
| STDEV read length |
6,840.7 |
| Total bases |
222,748,962.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
39430 (98.5%) 220.3Mb |
| >Q7 |
34291 (85.7%) 195.9Mb |
| >Q10 |
15002 (37.5%) 89.0Mb |
| >Q12 |
3263 (8.2%) 14.8Mb |
| >Q15 |
127 (0.3%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.9 (156) |
| 2 |
19.1 (201) |
| 3 |
18.2 (180) |
| 4 |
18.2 (193) |
| 5 |
18.1 (137) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
48589 (11.0) |
| 2 |
47612 (9.3) |
| 3 |
47285 (10.6) |
| 4 |
47223 (7.8) |
| 5 |
46745 (7.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot