NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,423.7 |
| Mean read quality |
9.8 |
| Median read length |
491.0 |
| Median read quality |
10.6 |
| Number of reads |
8,781.0 |
| Read length N50 |
4,402.0 |
| STDEV read length |
2,631.5 |
| Total bases |
12,501,741.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
8781 (100.0%) 12.5Mb |
| >Q7 |
8753 (99.7%) 12.5Mb |
| >Q10 |
5439 (61.9%) 8.2Mb |
| >Q12 |
2075 (23.6%) 3.0Mb |
| >Q15 |
140 (1.6%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.8 (165) |
| 2 |
18.5 (238) |
| 3 |
18.3 (223) |
| 4 |
18.3 (124) |
| 5 |
18.1 (138) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
45938 (7.4) |
| 2 |
39101 (7.5) |
| 3 |
33133 (9.1) |
| 4 |
30118 (11.2) |
| 5 |
26415 (9.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot