QUAST

{"date":"31 July 2025, Thursday, 13:28:26","assembliesNames":["genome.nextpolish"],"referenceName":"","order":[0],"report":[["Alignment-based statistics",[]],["Reads mapping",[]],["Misassemblies",[]],["Unaligned",[]],["Per base quality",[{"metricName":"# N's per 100 kbp","quality":"Less is better","values":["0.00"],"isMain":true},{"metricName":"# N's","quality":"Less is better","values":[0],"isMain":false}]],["Statistics without reference",[{"metricName":"# contigs","quality":"Equal","values":[2985],"isMain":true},{"metricName":"# contigs (>= 0 bp)","quality":"Equal","values":[3002],"isMain":false},{"metricName":"# contigs (>= 1000 bp)","quality":"Equal","values":[2779],"isMain":false},{"metricName":"# contigs (>= 5000 bp)","quality":"Equal","values":[2008],"isMain":false},{"metricName":"# contigs (>= 10000 bp)","quality":"Equal","values":[1520],"isMain":false},{"metricName":"# contigs (>= 25000 bp)","quality":"Equal","values":[855],"isMain":false},{"metricName":"# contigs (>= 50000 bp)","quality":"Equal","values":[460],"isMain":false},{"metricName":"Largest contig","quality":"More is better","values":[5043373],"isMain":true},{"metricName":"Total length","quality":"More is better","values":[173540426],"isMain":true},{"metricName":"Total length (>= 0 bp)","quality":"More is better","values":[173546476],"isMain":false},{"metricName":"Total length (>= 1000 bp)","quality":"More is better","values":[173396425],"isMain":true},{"metricName":"Total length (>= 5000 bp)","quality":"More is better","values":[171348689],"isMain":false},{"metricName":"Total length (>= 10000 bp)","quality":"More is better","values":[167795608],"isMain":true},{"metricName":"Total length (>= 25000 bp)","quality":"More is better","values":[157097072],"isMain":false},{"metricName":"Total length (>= 50000 bp)","quality":"More is better","values":[143160687],"isMain":true},{"metricName":"N50","quality":"More is better","values":[534989],"isMain":false},{"metricName":"N90","quality":"More is better","values":[26287],"isMain":false},{"metricName":"auN","quality":"More is better","values":["1179267.6"],"isMain":false},{"metricName":"L50","quality":"Less is better","values":[61],"isMain":false},{"metricName":"L90","quality":"Less is better","values":[820],"isMain":false},{"metricName":"GC (%)","quality":"Equal","values":["46.38"],"isMain":false}]],["K-mer-based statistics",[]],["BUSCO completeness",[{"metricName":"Complete BUSCO (%)","quality":"More is better","values":["0.00"],"isMain":true},{"metricName":"Partial BUSCO (%)","quality":"Less is better","values":["0.00"],"isMain":true}]],["Predicted genes",[{"metricName":"# predicted rRNA genes","quality":"More is better","values":["434 + 4 part"],"isMain":true}]],["Similarity statistics",[]],["Reference statistics",[]]],"subreferences":[],"subreports":[],"minContig":500}

{{ qualities }}

{{ mainMetrics }}

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{{ coordNGx }}

{{ coordNAx }}

{{ coordNGAx }}

{{ coordmisassemblies }}

{{ featuresInContigs }}

{{ operonsInContigs }}

[{{ num_contigs }}, {{ Largest_alignment }}, {{ Total_aligned_length }}, {{ num_misassemblies }}, {{ Misassembled_contigs_length }}, {{ num_mismatches_per_100_kbp }}, {{ num_indels_per_100_kbp }}, {{ num_N's_per_100_kbp }}, {{ Genome_fraction }}, {{ Duplication_ratio }}, {{ NGA50 }}]

{{ allMisassemblies }}

{{ krona }}

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{"links":["icarus_viewers/contig_size_viewer.html"],"links_names":["View in Icarus contig browser"]}