NanoPlot statistics report

NanoPlot reports

Summary statistics

General summary
Mean read length 1,863.8
Mean read quality 10.1
Median read length 513.0
Median read quality 11.1
Number of reads 9,425,228.0
Read length N50 7,404.0
STDEV read length 3,664.0
Total bases 17,566,896,039.0
Number, percentage and megabases of reads above quality cutoffs
>Q5 9425227 (100.0%) 17566.9Mb
>Q7 9403275 (99.8%) 17560.9Mb
>Q10 6546202 (69.5%) 12613.4Mb
>Q12 3079763 (32.7%) 5456.4Mb
>Q15 151492 (1.6%) 52.1Mb
Top 5 highest mean basecall quality scores and their read lengths
1 25.6 (112)
2 25.3 (112)
3 24.9 (100)
4 24.5 (203)
5 24.5 (104)
Top 5 longest reads and their mean basecall quality score
1 85973 (8.6)
2 81676 (8.0)
3 77855 (11.4)
4 74731 (9.1)
5 72398 (9.3)

Plots

Weighted histogram of read lengths

Weighted histogram of read lengths after log transformation

Non weighted histogram of read lengths

Non weighted histogram of read lengths after log transformation

Yield by length

Read lengths vs Average read quality plot using dots

Read lengths vs Average read quality kde plot