NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,396.7 |
| Mean read quality |
8.5 |
| Median read length |
1,347.0 |
| Median read quality |
9.5 |
| Number of reads |
26,621.0 |
| Read length N50 |
11,476.0 |
| STDEV read length |
5,808.6 |
| Total bases |
117,044,414.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
26297 (98.8%) 115.9Mb |
| >Q7 |
23217 (87.2%) 105.1Mb |
| >Q10 |
11039 (41.5%) 52.3Mb |
| >Q12 |
2949 (11.1%) 11.8Mb |
| >Q15 |
111 (0.4%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.7 (1170) |
| 2 |
18.3 (330) |
| 3 |
17.9 (221) |
| 4 |
17.6 (212) |
| 5 |
17.2 (680) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
60133 (9.8) |
| 2 |
37001 (8.9) |
| 3 |
36854 (9.9) |
| 4 |
36662 (8.4) |
| 5 |
36607 (10.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot