NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,157.3 |
| Mean read quality |
10.1 |
| Median read length |
329.0 |
| Median read quality |
11.1 |
| Number of reads |
48,173.0 |
| Read length N50 |
5,675.0 |
| STDEV read length |
2,943.6 |
| Total bases |
55,749,375.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
48171 (100.0%) 55.7Mb |
| >Q7 |
47867 (99.4%) 55.7Mb |
| >Q10 |
32341 (67.1%) 40.6Mb |
| >Q12 |
17545 (36.4%) 22.2Mb |
| >Q15 |
2401 (5.0%) 0.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
27.1 (151) |
| 2 |
22.4 (95) |
| 3 |
22.3 (143) |
| 4 |
22.3 (312) |
| 5 |
21.9 (230) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
62036 (8.4) |
| 2 |
61325 (12.6) |
| 3 |
49899 (7.9) |
| 4 |
43833 (11.7) |
| 5 |
42730 (13.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot