NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,766.4 |
| Mean read quality |
8.4 |
| Median read length |
484.0 |
| Median read quality |
9.4 |
| Number of reads |
63,977.0 |
| Read length N50 |
7,118.0 |
| STDEV read length |
3,706.6 |
| Total bases |
113,010,370.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
63161 (98.7%) 111.7Mb |
| >Q7 |
55132 (86.2%) 100.0Mb |
| >Q10 |
25004 (39.1%) 48.0Mb |
| >Q12 |
6690 (10.5%) 9.7Mb |
| >Q15 |
336 (0.5%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.3 (296) |
| 2 |
20.1 (342) |
| 3 |
19.8 (180) |
| 4 |
19.5 (201) |
| 5 |
19.4 (132) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
70521 (7.9) |
| 2 |
45134 (9.0) |
| 3 |
43733 (5.0) |
| 4 |
41507 (7.4) |
| 5 |
39973 (10.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot