NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,831.8 |
| Mean read quality |
9.5 |
| Median read length |
457.0 |
| Median read quality |
10.3 |
| Number of reads |
29,923.0 |
| Read length N50 |
11,591.0 |
| STDEV read length |
5,316.9 |
| Total bases |
84,734,540.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
29923 (100.0%) 84.7Mb |
| >Q7 |
29786 (99.5%) 84.7Mb |
| >Q10 |
16504 (55.2%) 50.0Mb |
| >Q12 |
6648 (22.2%) 18.5Mb |
| >Q15 |
591 (2.0%) 0.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
24.1 (164) |
| 2 |
21.1 (109) |
| 3 |
20.9 (108) |
| 4 |
20.7 (134) |
| 5 |
20.4 (567) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
53681 (13.4) |
| 2 |
53108 (7.4) |
| 3 |
50656 (8.8) |
| 4 |
50222 (8.4) |
| 5 |
47421 (8.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot