NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,567.2 |
| Mean read quality |
9.6 |
| Median read length |
406.0 |
| Median read quality |
10.5 |
| Number of reads |
12,900.0 |
| Read length N50 |
7,038.0 |
| STDEV read length |
3,635.9 |
| Total bases |
20,216,631.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
12900 (100.0%) 20.2Mb |
| >Q7 |
12835 (99.5%) 20.2Mb |
| >Q10 |
7547 (58.5%) 12.5Mb |
| >Q12 |
3057 (23.7%) 4.5Mb |
| >Q15 |
231 (1.8%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.8 (209) |
| 2 |
20.7 (203) |
| 3 |
19.7 (187) |
| 4 |
19.4 (132) |
| 5 |
19.4 (121) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
48500 (11.9) |
| 2 |
48191 (11.8) |
| 3 |
45727 (11.5) |
| 4 |
43247 (9.4) |
| 5 |
41330 (12.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot