NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,503.7 |
| Mean read quality |
9.0 |
| Median read length |
672.0 |
| Median read quality |
9.6 |
| Number of reads |
8,853.0 |
| Read length N50 |
8,641.0 |
| STDEV read length |
4,270.9 |
| Total bases |
22,165,171.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
8853 (100.0%) 22.2Mb |
| >Q7 |
8809 (99.5%) 22.2Mb |
| >Q10 |
3846 (43.4%) 8.7Mb |
| >Q12 |
1150 (13.0%) 2.0Mb |
| >Q15 |
58 (0.7%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.9 (238) |
| 2 |
18.4 (194) |
| 3 |
18.4 (383) |
| 4 |
17.5 (312) |
| 5 |
17.5 (389) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
41847 (7.4) |
| 2 |
41617 (7.4) |
| 3 |
37019 (8.0) |
| 4 |
32428 (10.2) |
| 5 |
31617 (11.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot