NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,112.5 |
| Mean read quality |
9.1 |
| Median read length |
1,729.0 |
| Median read quality |
9.7 |
| Number of reads |
5,057.0 |
| Read length N50 |
9,781.0 |
| STDEV read length |
5,221.8 |
| Total bases |
20,796,992.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
5057 (100.0%) 20.8Mb |
| >Q7 |
5046 (99.8%) 20.8Mb |
| >Q10 |
2227 (44.0%) 9.3Mb |
| >Q12 |
691 (13.7%) 2.6Mb |
| >Q15 |
38 (0.8%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.7 (128) |
| 2 |
19.4 (137) |
| 3 |
18.6 (148) |
| 4 |
18.1 (115) |
| 5 |
18.1 (279) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
36290 (12.1) |
| 2 |
34039 (9.7) |
| 3 |
33082 (8.5) |
| 4 |
31621 (10.8) |
| 5 |
30423 (10.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot