NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,186.9 |
| Mean read quality |
10.9 |
| Median read length |
2,339.0 |
| Median read quality |
12.4 |
| Number of reads |
64,531.0 |
| Read length N50 |
11,937.0 |
| STDEV read length |
6,601.5 |
| Total bases |
334,716,870.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
64530 (100.0%) 334.7Mb |
| >Q7 |
64321 (99.7%) 334.7Mb |
| >Q10 |
49255 (76.3%) 270.9Mb |
| >Q12 |
35378 (54.8%) 201.2Mb |
| >Q15 |
8025 (12.4%) 41.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
23.3 (161) |
| 2 |
22.4 (132) |
| 3 |
22.3 (285) |
| 4 |
22.2 (254) |
| 5 |
22.2 (117) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
80592 (13.9) |
| 2 |
80536 (8.1) |
| 3 |
76898 (8.2) |
| 4 |
65710 (14.1) |
| 5 |
63171 (8.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot