NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,680.8 |
| Mean read quality |
10.4 |
| Median read length |
476.0 |
| Median read quality |
11.6 |
| Number of reads |
349,013.0 |
| Read length N50 |
8,575.0 |
| STDEV read length |
4,250.1 |
| Total bases |
586,629,956.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
349012 (100.0%) 586.6Mb |
| >Q7 |
348141 (99.8%) 586.3Mb |
| >Q10 |
243087 (69.6%) 414.0Mb |
| >Q12 |
156393 (44.8%) 263.6Mb |
| >Q15 |
29605 (8.5%) 19.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
26.4 (134) |
| 2 |
25.6 (95) |
| 3 |
25.5 (135) |
| 4 |
25.0 (100) |
| 5 |
24.7 (158) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
90968 (8.2) |
| 2 |
80808 (7.5) |
| 3 |
80445 (12.5) |
| 4 |
79691 (8.0) |
| 5 |
79041 (8.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot